Index

A

add_basis() (in module tool_create_cluster)

C

calc_cluster_langevin() (in module tool_create_cluster) calc_en_gaussian() (in module tool_create_substrate) calc_en_sin() (in module tool_create_substrate) calc_en_sin_tri() (in module tool_create_substrate) calc_en_tanh() (in module tool_create_substrate) calc_matrices_bvect() (in module tool_create_substrate) calc_matrices_square() (in module tool_create_substrate) calc_matrices_triangle() (in module tool_create_substrate) cluster_from_params() (in module tool_create_cluster)

cluster_inhex_Nl() (in module tool_create_cluster) cluster_poly() (in module tool_create_cluster) create_cluster() (in module tool_create_cluster) create_cluster_circle() (in module tool_create_cluster) create_cluster_hex() (in module tool_create_cluster) create_cluster_rect() (in module tool_create_cluster) create_cluster_special() (in module tool_create_cluster) create_cluster_tri() (in module tool_create_cluster) create_input_hex() (in module tool_create_cluster)

E

eulerArc() (string_method.Path method)

G

gaussian() (in module tool_create_substrate) get_brillouin_zone_2d() (in module misc) get_ks() (in module tool_create_substrate)

get_poly() (in module tool_create_cluster) get_rotomatr() (in module tool_create_cluster) grad() (string_method.PotentialPathAnalyt method)

H

handle_run() (in module misc)

L

load_cluster() (in module tool_create_cluster)

load_input_hex() (in module tool_create_cluster)

M

MD_rigid() (in module MD_rigid_rototrasl) MD_rigid_rototrasl module misc module module MD_rigid_rototrasl misc static_barrier_string static_roto_map static_rototrasl_map static_trasl_map string_method tool_create_cluster tool_create_substrate

P

params_from_ASE() (in module tool_create_cluster) params_from_poscar() (in module tool_create_cluster) particle_en_gaussian() (in module tool_create_substrate) particle_en_sin() (in module tool_create_substrate) particle_en_sin_tri() (in module tool_create_substrate)

particle_en_tanh() (in module tool_create_substrate) Path (class in string_method) plot_BZ2d() (in module misc) plot_UC() (in module misc) plt_cosmetic() (in module misc) PotentialPathAnalyt (class in string_method)

R

reparametrizeArc() (string_method.Path method)

rotate() (in module tool_create_cluster)

S

save_xyz() (in module tool_create_cluster) static_barrier() (in module static_barrier_string) static_barrier_string module static_roto_map module static_rotomap() (in module static_roto_map) static_rototrasl_map module

static_rototraslmap() (in module static_rototrasl_map) static_trasl_map module static_traslmap() (in module static_trasl_map) string_method module substrate_from_params() (in module tool_create_substrate)

T

tool_create_cluster module

tool_create_substrate module total() (string_method.PotentialPathAnalyt method)

U

update() (string_method.PotentialPathAnalyt method)